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Thesis Writing Checklist for MS, MPhil & PhD Students

A free, interactive seven-stage checklist that takes you from proposal to viva, written for MS, MPhil and PhD students in Pakistan and useful anywhere.

By the FHJCIS Research Team · Updated · 9 min read

This checklist covers the full journey of an MS, MPhil or PhD thesis, from proposal to viva. It is written for students in Pakistan, where the Higher Education Commission (HEC) sets national policies and each university adds its own rules, but the stages apply to most universities worldwide. Tick items as you go: your progress is saved in your own browser only (nothing is sent to us).

Always follow your own university firstDeadlines, thesis length, templates, similarity limits and publication requirements differ between universities and change over time. Use this checklist as a planning tool and confirm every rule with your supervisor and your university's current graduate handbook.

The checklist

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Stage 1: Topic and proposal

Most delays start here. A narrow, answerable question saves months later.

Stage 2: Literature review

A literature review is an argument that leads to your gap, not a list of summaries.

Stage 3: Methodology and ethics

Examiners look hardest at whether your method really answers your questions.

Stage 4: Writing the chapters

Write in cycles: draft, supervisor feedback, revise. Do not wait to polish everything at the end.

Stage 5: Formatting and referencing

Formatting errors are easy to avoid and annoying to fix in the last week.

Stage 6: Originality and integrity

Your thesis must be your own work, properly credited.

Stage 7: Submission and viva

Plan the last month so that nothing is left to the final week.

Common thesis mistakes and how to avoid them

  • A topic that is too broad. "AI in healthcare" is a field, not a thesis. Narrow it to a population, a method and a measurable outcome.
  • Research questions that change but chapters do not. Whenever a question changes, update the objectives, methods and conclusions too.
  • Starting the literature review too late, or never closing it. Keep a running review file and add new papers every month.
  • Writing everything at the end. Draft the methodology while you design the study and the results chapter while you analyse.
  • No backups. Use cloud storage plus an offline copy, and save dated versions.
  • Ignoring the template until the last week. Start in the official format so that you do not have to reformat 100 pages.
  • Last-minute similarity checks. Run an early check on your first chapters so you can fix paraphrasing habits in time.

The Pakistan and HEC context

The HEC sets national policies for higher education, including a plagiarism policy that universities are expected to follow and a Journal Recognition System (HJRS) that classifies journals. Universities then set the details that affect you directly: coursework credits, minimum duration, thesis format, the similarity limit, committee approvals and whether you must publish a paper before defending. Because these details differ and are updated, never rely on a rule you heard from a friend at another university. Check the current HEC policies and your own university's regulations, and confirm with your supervisor or graduate office.

Looking for a journal to publish from your thesis? Read our guide on how to choose a journal and avoid fake or predatory journals.

FAQ

Frequently asked questions.

How long should an MS, MPhil or PhD thesis be?

There is no single required length. It depends on your discipline, degree and university, and some universities state minimum or maximum word counts. Ask your supervisor for recent approved theses from your department and check your graduate handbook. Quality of argument and evidence matters more than page count.

What is the difference between an MS, an MPhil and a PhD thesis?

In Pakistan, MS and MPhil are research master's degrees that usually combine coursework with a thesis, while a PhD requires an original contribution to knowledge and is assessed more strictly. Exact credit hours, duration and publication requirements are set by each university within HEC guidelines, so check your own programme rules.

Can I use AI tools such as ChatGPT in my thesis?

It depends on your university's current policy. Some allow limited use for language support with disclosure, others restrict it. Whatever tools you use, you remain responsible for the accuracy, originality and citations of everything you submit. Ask your supervisor and read your university's policy before you use AI tools.

When should I run the plagiarism (similarity) check?

Run an early check on your first chapters and another before submission. Learn how to read the report: quotations, references and common phrases can raise the percentage, while uncited paraphrasing is the real risk. Follow your university's required process and limit.

Do you write theses for students?

No. FHJCIS does not write your thesis for you. We offer guidance and support such as planning, structure review, methodology consistency checks, academic editing, formatting and reference checks, so that your own work is stronger. You remain the author and responsible for originality and compliance. Read more on Research & Thesis Support.

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Academic integrity

Guidance that strengthens your own work

These guides give general information, not legal or institutional advice. Your university and target journal set the rules that apply to you. FHJCIS provides research support, editing, formatting and analysis assistance; clients remain responsible for originality, accuracy, authorship and institutional compliance.

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